I would caution that with the Atomics, soaking pressurized is a very good idea. When off the cylinder, the second stage seat saver orifice can work against you. Without the cylinder pressure, the 2nd is no longer sealed, so water could travel down the lines into the 1st. Keeping the 1st above the second will work, but soaking pressurized is easier, and not a bad idea for any reg.
Yep, the lube adds cost that is really not necessary as there are better solutions.
Sealed diaphragms definitely make things easier, especially if diving in saltwater. I’ve got 3 sealed diaphragms in the family kit. The oldest is just under 20 years old. The 1sts get rinsed, the seconds get soaked pressurized, and at service time, it is rare that the tech doesn’t remark on the cleanliness.