I've sucked the last bit of air out of wings, ziplock bags, smbs, air mattresses, you name it. In all cases, I'm just using volume in my mouth to pull a vacuum, not sucking in with my lungs. Bacteria aside, I wouldn't want to inhale any sea or lake water. You'd need a pretty heinous strain of bacteria to be growing in your BCD to cause infection from just incidental mouth contact, and if so, it means you are doing a terrible job of rinsing out your gear with fresh water after the day's diving is complete.
That said, yeah no need for it as previously stated. Before you go on the boat, just fully submerge your BCD in the rinse tank and hold the inflation valve open above the water and you'll get rid of 99% of any gas volume.
I'd be far more concerned about the entire group managing their equalization on a "hot drop" like that. The pint of air left in your BC should be nothing compared to the 5lbs negative weight of a full cylinder of gas, and if you're REALLY concerned just add a pound or two of lead until you're comfortable with the whole procedure before giving yourself pneumonia doing a vacuum pack of your BC.