With my smaller tee and ball valve, I can't get close to zero flow with the valve open. Perhaps because I chose a tiny, but supposedly powerful shop vac. I have to use my dimmer, and zero flow is at about 15% rpms with the valve open.
I mostly use the ball valve as a way to modulate the low SCFM half, for reasons the engineering experts alluded to above: with a slowly advancing dimmer switch, the motor is silent, then kicks in, albeit at a 15% rpm rate. But with the ball valve closed, that lowest rpm immediately generates 5 SCFM, which I can eliminate with the valve.
A smaller vac motor and a larger PVC pipe and valve prior to the 3/4" rotameter opening will probably do the trick without a dimmer, however.
And I'll bet that it makes a difference which flow path the rotameter is plumbed into - straight in vs at a right angle. You might even be able to get more creative in making the rotameter arm less efficient (read: lower flow) with a Y-fitting instead of a tee.