Note: I'm not cave trained.
In my (UTD) Overhead Protocol training, in addition to lost buddy, we used cookies for lost line drills. Find the line, tie in, drop a cookie on the side of your spool that you went.
I guess that's just a special case of intersecting lines, though.
I am having difficulty visualizing what you are describing. Generally, in a cave, you'd drop an arrow to mark your direction out (in case you get mis oriented while searching) then tie the line from your safety spool or reel into the arrow. If you became directionally confused, a cookie would not point you or a lost teamate in the right direction to get out.
If you are marking intersection lines (a T, etc), you'd mark the exit side of the T or intersection (usually the way you came in) to again eliminate any confusion about which way leads out. It can be surprisiong how different a simple T can look when coming from the other direction, especially when the angles are a little odd.
Cookie use is basically common sense based on a simple rule of using the cookie to mark the exit side of something or as a means of negating an arrow that is for what ever reason not pointing to an exit you want to use.
In a cave you may even decide to drop a cookie on your exit side of a set of double arrows denoting a mid point between exits to verify the proper/preferred exit side, especially in a lights out/silt out situation. It makes more sense than adding another arrow on one side or the other of the double arrows and will not be confused with an arrow denoting an "easier" exit by other teams.
Similarly, if a diver came upon a third arrow added by someone at a jump marked by two arrows in the same direction, it can create confusion as to exactly what it all means - jump? midpoint?, etc. And in a silt out, a diver runs the risk of feeling two of them and forming the wrong conclusion about what it means. A cookie dropped by someone else on the other hand does not confuse the basic navigational picture.
And being mostly common sense, it is not hard to learn on the internet, with due regard to local culture and customs.