Hi maxmaxum,
Using the "water" method to measure cracking pressure should at least allow you to "match" the settings on your two Protons (set them so they both crack at the same depth).
Just a few more things (which you probably already know, but just in case):
1. Small adjustments of the 2nd stage orifice go a LONG way. I recommend 1/10 of a turn at a time (clockwise increases pressure on seating surface and increases cracking pressure, counterclockwise decreases).
2. Be sure to ALWAYS depress the purge button when adjusting the orifice to prevent "cutting" the soft seat.
3. Re-check and re-adjust lever height after adjusting the orifice. Again, a little goes a long way (a small turn on the nylock nut moves the lever quite a bit).
With the regulator pressurized and the lever height set correctly, there should be a slight "rattle" if you shake the 2nd stage (this is the demand lever tapping on the diaphragm), but no rattle when the reg is unpressurized. This rattle when pressurized indicates just a slight amount of slack between the lever and diaphragm.... if there is no slack, then the reg may be too sensitive and freeflow.... but too much slack, and it will breath poorly.... I raise the lever until the rattle just goes away, then slowly adjust it lower until it just returns.
Best wishes.