I think those of us involved in moderately deep and long dives would all be prepared to admit that we have exceeded manufacturer-prescribed scrubber durations on a fairly regular basis, in part because we don't have much choice in order to do the dives. The reason we don't get into trouble is that those prescribed durations are based on fairly aggressive testing protocols which, as you point out, represent exercise and ventilation levels that are not sustained throughout a typical deco dive (in which there is a period of moderate exercise early followed by a period of relative rest during deco). Therefore, a typical dive can likely be longer from a scrubber point of view than suggested by tests used to develop recommended limits.
Beester, to expand on a point that Simon flags. Rebreather manufacturers have a pretty in depth knowledge, about their scrubbers unique performance envelope, from their R&D engineering process. This comes from the mass of reporting generated, when they conduct thorough unmanned testing of their rebreather, at the full swathe of different gases, depths, temps and workloads that it's designed to operate within the performance envelope of. Done as part of a formal Test & Evaluation process to both Validate and Verify the design before any manned test diving and then retail is even a consideration.
A great historical example of this is Peter Ready, mentioning that he only found out that his original PRISM scrubber performance was sub-par when he had it tested in cold water, after originally only conducting warm water testing. Which necessitated him going back to the drawing board.
There is nothing stopping this rather useful scrubber duration data at various tempts, depths and workloads, being publicly releasable and included in the units user manual to enable safer pre-dive planning. I'm sure a simple request to JJ would be quite enlightening. And I'm sure Simon has done the same for his unit.
As example, if you refer to pages 112-114 of
https://www.opensafety.eu/manuals/OR_Apocalypse_User_Manual_110505.pdf you can see that all other criteria remaining unchanged for a 90m dive, simply going from a workload of 22lpm to 40lpm RMV - as you possibly did - halves the available scrubber duration and would have a considerable impost on your pre-dive planning if diving that particular rebreather.
In essence, what you experienced working removing fishing nets at depth, is no different to what you would already have planned for, in covering loss of your scooter at depth, and potential need to suddenly fin hard.
Note that while the Open Safety SRB uses a 2.2kg Micropore EAC, that equates to 2.6kg of granular sorb, its testing is also conducted at the mouth as opposed to the inhale breathing hose. As this takes into account the deadspace of the BOV it articulates a lesser duration than other rebreathers testing but was required of Open Safety for CE certification to EN14143. And it probably doesn't need to be said that the scrubber duration results for one rebreather aren't transferable to another make; even if they use the same weight of sorb.
As an aside, figures 5-7, 5-8 and 5-9 in the below link show the scrubber exceeding 0.5%SEV breakthrough, shortly into the dive and then backing off, before going back through 0.5%SEV a second time. AFAIK this is unique to a Micropore EAC but it does potentially visually show what you experienced across your two dives.