first off, it is no longer a pony bottle if you're intending to use it, it is a stage bottle. If you want to dive with a stage bottle, then that is perfectly fine, just understand how to use them and proper gas management.
I agree with 100ft on an al80 may not be the smartest idea, but such is life.
Why are you doing a 3 minute stop at 50ft? You are still ongassing with that profile btw, certainly not helping your offgassing and wasting about 150-200psi/4-5cf of gas for nothing. I'm not getting into a deep stop discussion, but half depth is idiotic especially when you are well within NDL's since you are still ongassing. Half pressure is fine, but half pressure of 100ft is 30ft ish, not 50.
Other than that, listen to what was written by the above posters about making your sac rate better by being more efficient. Quick mental math puts your SAC rate at 0.8 give or take, which is very high. If you can get your SAC rate down to 0.6, you will hit your NDL's on an AL80. 0.6 is still pretty high unless you're kicking around all over the place in which case it is "normal". If your computer tracks average depth you need to be tracking your sac rate from every dive. The 0.8 comes from 12 minutes at 100ft, burning approximately 1500psi which gives you 400psi for descent which is a little conservative so it very well may be 0.9cfm. Point still stands that slowing down and learning to be efficient is going to fix most of this problem for you.
I would recommend doing a modified breast stroke kick as your only kick. Does two things, prevents you from silting the place up, but more importantly it uses small muscles. When you flutter kick you use the 3 biggest muscles in your body, glutes/hamstrings/quads, with a frogkick, you use your calves, and the small muscles in your hip. Smaller muscles burn less oxygen, so combine a more efficient kick with using more efficient muscles, and your breathing rate goes down.
the whole 50ft thing was a "suggestion" for the wreck we dove on that day. it is not something I normally do. Everyone else in the group did the stop as well (only person I knew was my father, others were part of the group in boat we hired)