There is flooding and Flooding. It's a matter of how fast the leak can be stopped, and how fast the water can be pumped out. I was in a flooding submarine, and I'm still here, so it isn't an automatic trip to the bottom.
The reason I brought up the large number of riders on a small boat, is that if you are on your way to close a hull valve to stop the flooding and you have to get people out of the way to access the valve, you lose time. Time is not your friend in a casualty. Not only does more water come into the boat, but it has more time to affect other systems like shorting out electrical.
Another issue with diesel electric submarines is a battery explosion and fire. If it happened while snorkeling, the bubble could be lost and never recovered. The USS Cochino sank off Norway, the story of how the crew was saved is worth reading.
There all manner of casualties that could happen. As I was told, "it takes a crew to run a submarine, but only one man to sink it."
Not offhand. The torpedo tubes on Nuc subs, when I was in were basicly, if not, the same tubes used on WWII and used the same interlocks, so I'm figuring it was an exceptionally good system. I have read about fleet boat disconnecting them to deal with a torpedo stuck partway out of the tube. Of course fleet boats could get the tubes above the water level.