The DCS issue aside, it's the basic physics of diffusion that the greater the pressure difference between two volumes, the faster that molecules will move from the area of high pressure to the area of low pressure.
Other factors that affect diffusion speed are temperature, the relative concentration of different molecules, surface area and membrane porosity. But in this case we are holding all of those constant. It's only the pressure differential that varies.
Specifically, the two volumes are the dissolved gases in the tissue and the surrounding blood. The gases in the blood are very near ambient while the gases in the tissue are at some higher pressure. As we ascend, the pressure differential between the gases in the tissue and the blood increases and thus the speed in which the N2 moves from the former to the latter increases.
The very fastest offgassing plan is always to ascend straight to the surface and then breathe 100% O2. Of course that ignores the whole reason you are trying to offgass N2 which is to reduce the likelihood of DCS. Still if you concerned about minimizing your N2 load for the next dive(s), doing your final O2 stop at 3m instead of 6m would have a small, but real, advantage.
If this doesn't show up in the results from a particular decompression algorithm, then that shows the programmer or person creating the algorithm has made simplifying assumptions, not that the physics is invalid.