Sharing my recent trip to Malapascua:
Did my dives with Evolution Dive Resort, they are very professional. My friends were freshly OW-graduates, and though it wasn't their responsibility, a Dive Instructor took them for the 1st day's dive and went through all the basics again with them. I think her name's Mette or something. Definitely will join them again. They do offer lodgings and I think it seemed quite reasonable - I didn't stay with them, so I won't know.
As mentioned by some other in the forum, they are really strict about the usage of pointers and gloves, though they were very nice about it to me, they were very firm on safety issues etc which I see it positively. There were some china Chinese divers, and though I hate to say this, they generally are relatively inexperienced and therefore more likely to damage the reefs through the use of pointers etc.
Temperature-wise, we went end Jan 2017, it was quite cold in the waters. Do wear a full wetsuit if you need it. The DMs all wore full-length wetsuits, some even wore dive hoods.
Dive trips, I would highly recommend Gato Island, saw white-tip sharks and many interesting critters like frogfish, sea horses, nudibranches and sea kraits. I would also recommend the thresher shark dives, do book in advance as they are quite popular.
Foodwise, I was quite pleasantly surprised, though I had Low standards.
I'll would also recommend Bohol - Balicasag was good! I'll be heading to Moalboal end of the year