I'm very new to diving, so I still think of a lot of things in terms of the other critical missions kind of activities that I've spent most of my life in. I would not be surprised, if I was seeing this scenario being controlled by a diver in full and calm possession of his faculties but dealing with an emergency, of seeing a safety stop. We strongly tend to revert to training under stress, and the training we revert to is the simplest version. The simple version seems to me to be: We're ascending, and we're breathing, therefore there's a safety stop. While that's not a true statement in all cases, it's still the simple impulse.
Obviously, if you look at a gauge and see what makes you expect to start sucking vacuum momentarily, a safety stop is no quite the best decision. But aside from the training reflex, there's considerable comfort in the feeling that you're following training. If it's not clearly contraindicated, I can't fault someone for a safety stop that helps keep things cool by suggesting that "we had a problem, but it's really not so bad now if we can still do our safety stop." Are there more things that can go wrong during the stop? Sure, just as they can on the surface. But the point is that the safety stop in this case isn't surprising and probably represents a training effect that isn't such a bad thing.
In some situations, the "safety stop" might be of unlikely physiological benefit but might be just the right pause before dealing with the surface, and there's probably something that could be said that's analogous to the pilots' "A good landing is one you walk away from."
I wonder that new divers aren't required to read and analyze a ton documented accidents. There are so many things to drill on in training that it's easy to miss the emphasis on the reason for most of the drills. And that's that if you ask, "What kills divers?", its the same answer as, "What kills pilots?" Lack of air. Someone talked about, years ago, essentially every dive ending out of air. That's worth thinking about. We don't think that way today, because we have a gauge. Therefore, having a gauge, we don't expect to run out of air, but we do, when we don't keep up with the gauge, and I suspect the psychological shock is more severe now.