What part of the Bay Area do you live in? We'll be able to give dive shop recommendations based on that. There are plenty of good LDS in the area that offer quality instruction, with the bigger ones having more class options that can better fit your schedule.
Here's a few:
5thd-X (no storefront, but full online store and range of classes)
www.5thd-x.com
Diver Dan's (Santa Clara)
www.diverdans.com
CA Dive Center (San Bruno, near SFO)
www.cadive.com
Wallin's Dive Center (San Carlos)
www.wallins.com
Capt. Aqua's (Hayward & Dublin)
www.captainaqua.com
Any Water (San Jose)
www.anywater.com
Aquan Sports (San Carlos)
www.aquansports.com
There are plenty more, including the ones previously mentioned by yourself and others in the thread. They run the range of organizations from PADI, SSI, NAUI, and GUE. Pick your flavor.
I'm a PADI divemaster through Diver Dan's, so I can personally recommend them. I also have furthered my diving education through the folks at 5thd-x, so I can without hesitation recommend them as well.
Good luck and dive safe.
Mel