A) Are your "regular socks" that you mention cotton? Repeat after me: "I will not wear cotton under a dry suit, even a t-shirt".
B) Are the booties you're wearing over the top your regular, worn-with-a-wetsuit booties? If they are, this could be your problem, they are too tight. I used to wear wetsuit booties over my old CF200, but they were a size bigger. An easy way to tell if tightness is the problem is to look at your fins - if they're the same ones that you use with a wetsuit, they (and the booties) are too small.
C) How's your trim? If you have head-up/feet-down trim, the feet get squeezed. Trim yourself out flat, and the squeeze disappears, plus you can put just a bit of air into the feet to help keep them warm.
Yes, great advice, especially to avoid tightness.
Below 40F, I like to use thick, loose fitting wool socks plus Weezle socks and my Rockboots are 1 size oversize and loosely laced.
Get air into the socks with trim changes, as James pointed out.
Bigger fin pockets, if necessary, too.
I'm going to try Rockboots 2 sizes oversized soon because I'm getting slightly cold feet after a couple hours in 38F water....
Dave C