Rick,
Sorry to hear about this- Atomic has great service, but you don't deserve any other problems after having a flooded computer.
A couple of questions:
What firmware version does this have? You can see this on the System info Screen. Do you have access there to a computer that could be used to upload new firmware?
When you say it was stuck on a screen, do you mean the Dive screen, as in still showing depth after exiting a dive, or the Post Dive screen, the one that shows summary data and comes up automatically after 5 minutes at the surface? I'll note that the Cobalt won't allow you to back up out of the dive screen until you have been at the surface more than 2 minutes, as before then another descent would be counted as part of the same dive.
When you say there is another dive that can't be read, do you mean it shows just dashes in the log? I'm going to PM you with contact information, maybe you can take a picture of the dive log.
Is the surface pressure showing on the System Info page correct?
Answers to these questions would help us determine what to do.
Ron