There are two version of the course--one with tables and one with computers. If the student took the computer version of the course, then the student should have had extensive training in how to use a computer to plan and execute a dive.
Surfacing an unconscious diver is explained in the PADI OW course content, but it is not practiced in the course. It is a part of the Rescue Diver course. Please note that there have been extremely few known instances an unconscious diver being surfaced and then being revived in the history of scuba diving. As for the rest....
- The percentage of oxygen in air will be covered in a nitrox course, but it has no value for a diver otherwise. How would knowing that affect a dive plan?
- Basic compass navigation is covered briefly in the academic portion of the course, and it is required for the open water dives. A student is required to demonstrate the ability to follow a compass direction on the surface, and the student is required to follow a direction, turn, and follow the reciprocal heading under water.
- Ascent rates are very much a part of the academic instruction, the pool instruction, and the open water dives.
- Safety stops are explained in the course content and are supposed to be included in all the required OW dives.
You can blame poor instruction for the student not knowing these things, but the information is part of the academic materials the student is supposed to study, they are part of the knowledge reviews at the end of each chapter, and they are on the final exam. If a student really has no knowledge of these issues immediately after a class, then you are dealing with a student with a significant problem with short term memory.