I must be misunderstanding/misusing the NOAA Oxygen Exposure table. Or misunderstanding the term "CNS clock". Or something else.
What I'm seeing is that the limit for 1.2 ppo2 diving is 210 minutes and that the limit for 1.4 ppo2 diving is 150 minutes.
So, in the first example I used, after the first dive to 95 feet(approx 1.4 ppo2), I'd have used 60% of my exposure. (60 minutes would be 40%, another 30 minutes adds 20%, subtracted from 100% I'd have 40% remaining exposure time for the 2nd dive.) On that second dive I'd use the remaining 40% after 60 minutes. If I did the entire 90 minutes, my exposure would be 120%?
http://www.anaspides.net/documents/scuba_diving_documents/NOAA CNS Percentage Table.pdf
I didn't consider 90 minute half-time during the SI.