From one who services both models, I have a few thoughts.
First, the Proton is a bit easier to fine tune for breathing effort thanks to the access port. I also like that the second stage is easily disassembled without any tools. It also comes with a more flexible hose, which many divers find more comfortable. The only real problem is that bubble interference is more common in various body positions. I find my own two to have excellent stability, and no noticeable breathing resistance.
The Abyss is extremely robust, as it has only a few O-rings. It, too, offers very stable performance. The fact that it has a larger diaphragm allows the inhalation effort to be slightly less due to the mechanical advantage. It also has better bubble dispersion than the Proton. Fine tuning is a bit tougher and typically takes me at least twice as long to get "just right".
Both are great regs. They will serve 90% of the world's divers at least 90% of their dives all in a simple, robust, and very reliable package.
Greg
Former Science Editor for Rodale's Scuba Diving Magazine