Ok, as a scientist I think that it is my duty to intervene here before this thread gets even worse. Some clarifications about the original observations that led to this post:
1) The fact that the scientists collected a lot of fish doesn't mean that they intended to do so. In fact, it came as a complete surprise. They used the usual fishing gear (nets) and luckily fished an aggregation of the species they were studying. It is not the same as going out and killing 5,000 polar bears one by one just to see what they eat. Every fisherman knows that when you throw a net or a line in the water you don't know what you will get. In this case they caught the fish as a surprise. Also, the conclusion of the study wasn't reported by the OP. Here it is: "New Hope For Commercial Fisheries? Good Catch Doesn't Necessarily Mean That Depleted Stocks Have Recovered". In other words, the scientist did not intend to haul up 5 tons of an endangered fish, as the OP suggests. Still quoting from the original article:
"In combination with previous stock assessments, fisheries biologists onboard interpreted the catch as a sampling of a
discrete, small-scale aggregation of this fish species."
Please, read the complete article here:
http://www.sciencedaily.com/releases/2006/12/061226134654.htm
2) A few clarifications about the "destructive nature" of fisheries research:
a - Everybody has to eat.
b - Ideally we should develop sustainable extraction practices. To achieve that in fisheries we need to know some basic biological characteristics of the species we fish. These are: when they reproduce, how fast they grow and how many are there.
c - To know when and how often they reproduce (to close seasons and establish minimum size catches accordingly) we have to kill some fish to study their gonads. To see how fast they grow we need to kill some fish and count the rings in their ear bones (otoliths). To estimate how many are there we have to know how many fish are brought back in an X ammount of hours by a certain crew of fishermen (catch per effort unit).
d - Every one of the techniques above requires destructive sampling (dead fish).
3) Are there alternative less destructive techniques? Not at the moment, one of the biggest obstacles that science faces is the lack of appropriate funding (GWB decreased funding for the National Science Foundation). The development of new techniques requires lots of (not presently available) money, and the application of these new techniques requires training of personel (more money).
4) Answering to the comment: When a scientists says, "that's the only way we can blah blah ..." he usually means that's the only way he can do it with the funds he has in hands. But also remember, there are good dentists and bad dentists, good cops and bad cops, good scientists and bad scientists.
I think the comment that environmental impact of research is a "nanodrop in the bucket compared to commercial trawling intensity" is very correct. Scientists are few and underfunded, fisheries data for most commercial species is either bad or non-existent. With all the difficulties that we already face, the last thing that scientists need is environmentalists being against research, remember, we are working towards a common goal.
I am sorry for the rant, but I thought it was necessary...
Luiz