I have two ys110 (which are not as trigger sensitive as the YS110a's are)..and there are a huge number of ways to make the system work well.
I mostly use the strobes set very wide, almost level with camera (to avoid the shadow issue) and pointed at a spot behind where my focus plane is.
Setting wise, I start with using ISO 80, 1/60 second and use auto.
Most of the time, if you get the viewing angle correct, you get a nice exposure:
However, in clear water, shallow water the background will be too light...likewise, with fast moving things, they tend to be blurred... so I have shutter priority setup with 1/500 (for starters) and Aperture priority setup with F8 (or you can put the neutral density filter in).
Too much outside light looks like this:
If you want the background darker, just do the F stop or shutter adjustment.
The second strobe can be set as a fill flash and the main used on auto...just remember to adjust the fill flash with distance.
Here is a darker background image (using 1/500 due to the fish moving so fast).
i Have far more "mistakes" from using the wrong settings, so if someone ever wants to know everything one can do wrong.. just ask.