It does not harm the calculation ... nor does the computer give you inaccurate information if you do reverse profiles. That's not what they mean.
What they are referring to is how the computer calculates your no-decompression limit, based on its method for calculating residual nitrogen and off-gassing rates.
If you do a shallow dive first, then do a deep dive, the computer calculates your NDLs to provide you with less overall bottom time than it would if you were to do the exact same dives in the reverse order.
All dive computers will ... to some degree ... some more than others, depending on the algorithm they use for calculating NDL.
That's all it really means ...
... Bob (Grateful Diver)